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SRX21299285: Illumina NovaSeq6000 Sequencing of Dock8_028 Metatranscriptomic Paired-end Library
2 ILLUMINA (Illumina NovaSeq 6000) runs: 3.1M spots, 930.5M bases, 385.6Mb downloads

Design: Illumina NovaSeq6000 2x151 sequencing of Dock8_028 metatranscriptomic paired-end dual index library
Submitted by: NIH Intramural Sequencing Center (NISC)
Study: The skin microbiome of DOCK8-deficient patients
show Abstracthide Abstract
Dedicator of cytokinesis 8 (DOCK8) deficiency is a rare autosomal recessive, combined immunodeficiency that features cutaneous viral-associated manifestations, including molluscum contagiosum, herpesvirus infections, and warts (HPV infections) along with atopic dermatitis. We present a comprehensive investigation of the skin microbiome of DOCK8-deficient patients, focusing on the skin virome. We utilized both reference-based and reference-free analyses to investigate the microbial (viral) 'dark matter' and discovered a large number of novel human papillomavirus genomes.
Sample: RNAseq library
SAMN36811609 • SRS18548218 • All experiments • All runs
Organism: skin metagenome
Library:
Name: BCC3583_1_L19316543
Instrument: Illumina NovaSeq 6000
Strategy: RNA-Seq
Source: METATRANSCRIPTOMIC
Selection: cDNA
Layout: PAIRED
Construction protocol: Libraries were prepared using the stranded total RNA prep kit (Illumina, 20040529) with AMPure XP beads (Agencourt, A63881) following an initial removal of rRNA with the FastSelect -rRNA H/M/R kit (Qiagen, 334386). Unique-dual indexes (Illumina, 20627581) were ligated to the cDNA libraries. Library quality was assessed using Qubit and Bioanalyzer.
Spot descriptor:
forward152  reverse

Pipeline: show...hide...
StepPrev StepProgramVersion
1NILRTA3.4.4
Runs: 2 runs, 3.1M spots, 930.5M bases, 385.6Mb
Run# of Spots# of BasesSizePublished
SRR255706201,660,290501.4M206.7Mb2023-08-15
SRR255706211,420,992429.1M178.9Mb2023-08-15

ID:
28736245

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